SRX3744105
GSM3024001: 2h WT replicate1; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
2H WT CD8 CD8+ T-cells
strain
C57BL/6
genotype/variation
Runx3+/+
time point
2h

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Treated with 50uL of Tn5 transposase reaction mixture( Nextera DNA Sample Prep Kit) Created libraries using Nextra DNA Sample Kit, as per Buenrostro et al, 2015

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26990249
Reads aligned (%)
87.9
Duplicates removed (%)
55.2
Number of peaks
25387 (qval < 1E-05)

mm9

Number of total reads
26990249
Reads aligned (%)
87.8
Duplicates removed (%)
55.4
Number of peaks
25483 (qval < 1E-05)

Base call quality data from DBCLS SRA