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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: F9
ATCC
MeSH
RIKEN BRC
SRX3744100
GSM3024032: Suz12 sh H3K27me3; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Pluripotent stem cell
Cell type
F9
Tissue
Testis
Disease
Embryonal Carcinoma; Testicular Teratoma
Attributes by original data submitter
Sample
source_name
F9 cells
tisse
Testis
disease
Embryonal carcinoma
morpology
Epithelial
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, sonicated and protein were immunoprecipitated by antibodies. DNA libraries were constructed by standard illumina protocol.
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
81655180
Reads aligned (%)
97.8
Duplicates removed (%)
14.1
Number of peaks
5254 (qval < 1E-05)
mm9
Number of total reads
81655180
Reads aligned (%)
97.8
Duplicates removed (%)
14.2
Number of peaks
5163 (qval < 1E-05)
Base call quality data from
DBCLS SRA