Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
F9
Tissue
Testis
Disease
Embryonal Carcinoma; Testicular Teratoma

Attributes by original data submitter

Sample

source_name
F9 cells
tisse
Testis
disease
Embryonal carcinoma
morpology
Epithelial

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, sonicated and protein were immunoprecipitated by antibodies. DNA libraries were constructed by standard illumina protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
78243961
Reads aligned (%)
97.0
Duplicates removed (%)
12.9
Number of peaks
8229 (qval < 1E-05)

mm9

Number of total reads
78243961
Reads aligned (%)
96.9
Duplicates removed (%)
13.0
Number of peaks
8161 (qval < 1E-05)

Base call quality data from DBCLS SRA