SRX3738177
GSM3020965: CHD3-KO atac 2; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
HAP1
NA
NA

Attributes by original data submitter

Sample

source_name
Male Chronic Myelogenous Leukemia (CML) cell line derived from KBM-7
cell line
HAP1
genotype/variation
CHD3 knock out

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Illumina Nextera Library prep kit (FC-121-1030)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39291371
Reads aligned (%)
96.3
Duplicates removed (%)
51.7
Number of peaks
2546 (qval < 1E-05)

hg19

Number of total reads
39291371
Reads aligned (%)
95.9
Duplicates removed (%)
51.9
Number of peaks
2447 (qval < 1E-05)

Base call quality data from DBCLS SRA