Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
MLL-AF9 I-BET resistant cells
tissue
haematopoietic progenitors
condition
I-BET Resistant
strain
C57BL/6
shRNA
Scramble
treatment
LSD1i

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
50000 cells were lysed to isolate nuclei. Isolated nuclei were then tagmented for 30mins at 37°C. Tagmented DNA was then amplified into the final ATACseq libraries using KAPA HotStart Ready Mix (2x) (KAPA Biosystems). Libraries were size selected from 150-700bps.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
44402644
Reads aligned (%)
71.4
Duplicates removed (%)
55.7
Number of peaks
23647 (qval < 1E-05)

mm9

Number of total reads
44402644
Reads aligned (%)
71.4
Duplicates removed (%)
55.8
Number of peaks
23613 (qval < 1E-05)

Base call quality data from DBCLS SRA