Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
MLL-AF9 I-BET resistant cells
tissue
haematopoietic progenitors
condition
I-BET Resistant
strain
C57BL/6
shRNA
N/A
treatment
IBET

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
50000 cells were lysed to isolate nuclei. Isolated nuclei were then tagmented for 30mins at 37°C. Tagmented DNA was then amplified into the final ATACseq libraries using KAPA HotStart Ready Mix (2x) (KAPA Biosystems). Libraries were size selected from 150-700bps.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
28640097
Reads aligned (%)
63.8
Duplicates removed (%)
50.4
Number of peaks
11247 (qval < 1E-05)

mm9

Number of total reads
28640097
Reads aligned (%)
63.7
Duplicates removed (%)
50.4
Number of peaks
11230 (qval < 1E-05)

Base call quality data from DBCLS SRA