SRX3722709
GSM3017272: VHI0244o2-x4 input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
PDX02_input
biomaterial_provider
Caldas Lab, CRUK CI
tissue id
VHI0244o2-x4
tissue
Breast Cancer patient-derived xenograft (PDX)
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ThruPlex

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31389668
Reads aligned (%)
69.2
Duplicates removed (%)
19.7
Number of peaks
1017 (qval < 1E-05)

hg19

Number of total reads
31389668
Reads aligned (%)
68.6
Duplicates removed (%)
20.8
Number of peaks
1178 (qval < 1E-05)

Base call quality data from DBCLS SRA