SRX3722707
GSM3017270: V0980U-x2 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
PDX05
biomaterial_provider
Caldas Lab, CRUK CI
tissue id
V0980U-x2
tissue
Breast Cancer patient-derived xenograft (PDX)
chip antibody
ER (sc-543)
parallel chip antibody
CTCF (D31H2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ThruPlex

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
63252197
Reads aligned (%)
81.5
Duplicates removed (%)
68.9
Number of peaks
33606 (qval < 1E-05)

hg19

Number of total reads
63252197
Reads aligned (%)
81.0
Duplicates removed (%)
70.3
Number of peaks
33347 (qval < 1E-05)

Base call quality data from DBCLS SRA