SRX3722703
GSM3017266: AB555B-x2 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
PDX01
biomaterial_provider
Caldas Lab, CRUK CI
tissue id
AB555B-x2
tissue
Breast Cancer patient-derived xenograft (PDX)
chip antibody
ER (sc-543)
parallel chip antibody
CTCF (D31H2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ThruPlex

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27476475
Reads aligned (%)
92.3
Duplicates removed (%)
33.0
Number of peaks
63437 (qval < 1E-05)

hg19

Number of total reads
27476475
Reads aligned (%)
91.9
Duplicates removed (%)
33.5
Number of peaks
63164 (qval < 1E-05)

Base call quality data from DBCLS SRA