Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GATA6
wikigenes
PDBj
CellType: AGS
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX371981
GSM1255511: AGS GATA6; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GATA6
Cell type
Cell type Class
Digestive tract
Cell type
AGS
Primary Tissue
Stomach
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
AGS_GATA6_ChIP
cell line
AGS
cell type
gastric carcinoma
chip antibody
GATA6
chip antibody vendor
Cell Signaling
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were lysed in SDS lysis buffer. Cells were crosslinked at 50% confluency with 1% formaldehyde. Libraries were made using the NEB kit following the instructions of the manufacturer.
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
216819903
Reads aligned (%)
65.8
Duplicates removed (%)
61.7
Number of peaks
3018 (qval < 1E-05)
hg19
Number of total reads
216819903
Reads aligned (%)
65.3
Duplicates removed (%)
63.2
Number of peaks
2740 (qval < 1E-05)
Base call quality data from
DBCLS SRA