Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA6

Cell type

Cell type Class
Digestive tract
Cell type
AGS
Primary Tissue
Stomach
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
AGS_GATA6_ChIP
cell line
AGS
cell type
gastric carcinoma
chip antibody
GATA6
chip antibody vendor
Cell Signaling

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were lysed in SDS lysis buffer. Cells were crosslinked at 50% confluency with 1% formaldehyde. Libraries were made using the NEB kit following the instructions of the manufacturer.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
216819903
Reads aligned (%)
24.0
Duplicates removed (%)
63.2
Number of peaks
2740 (qval < 1E-05)

hg38

Number of total reads
216819903
Reads aligned (%)
25.2
Duplicates removed (%)
61.7
Number of peaks
3018 (qval < 1E-05)

Base call quality data from DBCLS SRA