SRX371733
mouse activated CH12 Nipbl rep3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

cell_line
CH12
cell_type
murine B cell lymphoma cell line
label
activated CH12

Sequenced DNA Library

library_name
mouse activated CH12 Nipbl rep3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20651286
Reads aligned (%)
82.2
Duplicates removed (%)
57.3
Number of peaks
1662 (qval < 1E-05)

mm9

Number of total reads
20651286
Reads aligned (%)
82.0
Duplicates removed (%)
57.4
Number of peaks
1687 (qval < 1E-05)

Base call quality data from DBCLS SRA