Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

age
6-8 weeks
cell_type
splenic B cells
genotype
Aicda enhancer 2 deletion
description
Switchable IgM+àIgA+ murine CH12-F3 Ly-1+ B cell lymphoma line was maintained and passaged every 2 days in RPMI 1640 supplemented with 10% FBS (ATCC), 1% penicillin/streptomycin (Invitrogen), 55 uM 2-b mercaptoethanol (Invitrogen). All cells were maintained at 37°C and 5% CO2 in a humidified incubator. Aicda enhancer E2 was deleted using TALENs approach.
cell line
CH12

Sequenced DNA Library

library_name
mouse activated CH12, AID-E2 deletion, Nipbl rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
34317593
Reads aligned (%)
80.6
Duplicates removed (%)
46.9
Number of peaks
7451 (qval < 1E-05)

mm9

Number of total reads
34317593
Reads aligned (%)
80.5
Duplicates removed (%)
46.9
Number of peaks
7461 (qval < 1E-05)

Base call quality data from DBCLS SRA