SRX370398
input of shTet1 TT2 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

label
TT2-shTet1

Sequenced DNA Library

library_name
input-shTet1-TT2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33945740
Reads aligned (%)
97.5
Duplicates removed (%)
11.4
Number of peaks
798 (qval < 1E-05)

mm9

Number of total reads
33945740
Reads aligned (%)
97.3
Duplicates removed (%)
11.4
Number of peaks
875 (qval < 1E-05)

Base call quality data from DBCLS SRA