SRX370393
ChIP-Seq of SALL4A in shScr-TT2 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

label
TT2-shScr

Sequenced DNA Library

library_name
SALL4A-shScr-TT2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
54403123
Reads aligned (%)
97.9
Duplicates removed (%)
16.3
Number of peaks
31942 (qval < 1E-05)

mm9

Number of total reads
54403123
Reads aligned (%)
97.6
Duplicates removed (%)
16.2
Number of peaks
31961 (qval < 1E-05)

Base call quality data from DBCLS SRA