Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
ALL-SIL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
ALL-SIL cell line
cell line
ALL-SIL

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was performed as previously described (Buenrostro et al. 2015) with minor changes. In brief, 50,000 cells were lysed and fragmented using Tn5 transposase (Illumina). Next, the samples were purified using the MinElute kit (Qiagen). The transposased DNA fragments were amplified and purified using the PCR Cleanup kit (Qiagen).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
158681066
Reads aligned (%)
86.8
Duplicates removed (%)
71.1
Number of peaks
27948 (qval < 1E-05)

hg19

Number of total reads
158681066
Reads aligned (%)
86.5
Duplicates removed (%)
71.6
Number of peaks
28583 (qval < 1E-05)

Base call quality data from DBCLS SRA