Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells

Attributes by original data submitter

Sample

source_name
Human PBMCs
tissue
Human PBMCs
age
Not collected
Sex
Not collected
sequencing adapter
TCCTGAGC
cell type
adult CD4+CD25hiCD127lo regulatory T

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were sorted by FACS, and DNA was extracted from lysed cells following conventional ATACseq and ChIPseq protocols ATACseq libraries were constructed using the standard Illumina Nextera protocol. H3K27ac ChIPseq libraries were constructed using a standard Illumina protocol using Truseq adapters.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
28985242
Reads aligned (%)
97.4
Duplicates removed (%)
36.1
Number of peaks
32185 (qval < 1E-05)

hg19

Number of total reads
28985242
Reads aligned (%)
97.1
Duplicates removed (%)
36.2
Number of peaks
32129 (qval < 1E-05)

Base call quality data from DBCLS SRA