SRX3678597
GSM2991263: E8 75 control ATAC-seq Rep1; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
E8.75 embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E 8.75 mouse embryos
genotype
wt

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Tn5 Transposase form Nextera DNA Sample Preparation Kit (Illumina)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13930703
Reads aligned (%)
98.8
Duplicates removed (%)
14.9
Number of peaks
16972 (qval < 1E-05)

mm9

Number of total reads
13930703
Reads aligned (%)
98.7
Duplicates removed (%)
15.0
Number of peaks
16928 (qval < 1E-05)

Base call quality data from DBCLS SRA