Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
E8.75 embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E 8.75 mouse embryos
genotype
Isl1Cre+/-/ Brg1fl/fl

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Tn5 Transposase form Nextera DNA Sample Preparation Kit (Illumina)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
12739415
Reads aligned (%)
98.4
Duplicates removed (%)
18.3
Number of peaks
4650 (qval < 1E-05)

mm9

Number of total reads
12739415
Reads aligned (%)
98.3
Duplicates removed (%)
18.6
Number of peaks
4647 (qval < 1E-05)

Base call quality data from DBCLS SRA