Antigen

Antigen Class

TFs and others

Antigen

KLF5

Cell type

Cell type Class

Digestive tract

Cell type

KATO III

Primary Tissue

Stomach

Tissue Diagnosis

Carcinoma

Sample

source_name

KATOIII KLF5

cell line

KATOIII

cell type

gastric cancer

chip antibody

sc-22797

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Chromatin extracts containing DNA fragments with an average size of 500 bp were immunoprecipitated using the antibodies ChIP-seq libraries were constructed using a ChIP-Seq sample prep kit (IP-102-1001, Illumina) and sequenced on a Genome Analyzer IIx instrument (Illumina)

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg38

Number of total reads

46719547

Reads aligned (%)

83.6

Duplicates removed (%)

9.6

Number of peaks

18068 (qval < 1E-05)

hg19

Number of total reads

46719547

Reads aligned (%)

83.0

Duplicates removed (%)

10.9

Number of peaks

17956 (qval < 1E-05)