Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA6

Cell type

Cell type Class
Digestive tract
Cell type
YCC-3
NA
NA

Attributes by original data submitter

Sample

source_name
YCC3 GATA6
cell line
YCC3
cell type
gastric cancer
chip antibody
sc-9055

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin extracts containing DNA fragments with an average size of 500 bp were immunoprecipitated using the antibodies ChIP-seq libraries were constructed using a ChIP-Seq sample prep kit (IP-102-1001, Illumina) and sequenced on a Genome Analyzer IIx instrument (Illumina)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
41918086
Reads aligned (%)
71.1
Duplicates removed (%)
10.7
Number of peaks
20824 (qval < 1E-05)

hg38

Number of total reads
41918086
Reads aligned (%)
72.8
Duplicates removed (%)
9.3
Number of peaks
20370 (qval < 1E-05)

Base call quality data from DBCLS SRA