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For hg38
Colocalization
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NKX2-1
wikigenes
PDBj
CellType: NCI-H441
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX366169
GSM1246715: TTF-1 ChIP-seq, H441 cells, 0h; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NKX2-1
Cell type
Cell type Class
Lung
Cell type
NCI-H441
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma Papillary
Attributes by original data submitter
Sample
source_name
H441_TTF-1_0h
ttf-1 expression
positive
cell line
H441
histology
lung adenocarcinoma
chip antibody
TTF-1 [Thermo Scientific, Catalog#: MS-699-P clone 8G7G3/1]
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP were performed as described (Koinuma et al, Mol Cell Biol 29: 172-186, 2009). SMAD3, SMAD4, or TTF-1-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
33781909
Reads aligned (%)
93.0
Duplicates removed (%)
5.4
Number of peaks
60169 (qval < 1E-05)
hg19
Number of total reads
33781909
Reads aligned (%)
92.5
Duplicates removed (%)
6.4
Number of peaks
59962 (qval < 1E-05)
Base call quality data from
DBCLS SRA