SRX366169
GSM1246715: TTF-1 ChIP-seq, H441 cells, 0h; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX2-1

Cell type

Cell type Class
Lung
Cell type
NCI-H441
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma Papillary

Attributes by original data submitter

Sample

source_name
H441_TTF-1_0h
ttf-1 expression
positive
cell line
H441
histology
lung adenocarcinoma
chip antibody
TTF-1 [Thermo Scientific, Catalog#: MS-699-P clone 8G7G3/1]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP were performed as described (Koinuma et al, Mol Cell Biol 29: 172-186, 2009). SMAD3, SMAD4, or TTF-1-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33781909
Reads aligned (%)
93.0
Duplicates removed (%)
5.4
Number of peaks
60169 (qval < 1E-05)

hg19

Number of total reads
33781909
Reads aligned (%)
92.5
Duplicates removed (%)
6.4
Number of peaks
59962 (qval < 1E-05)

Base call quality data from DBCLS SRA