SRX365498
GSM1245254: input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D cells
cell line
T47D
cell type
breast cancer cell line
passages
5-8
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Trizol extraction for RNA and ChIPs with an antibody against the progesterone receptor for immunoprecipitated DNA RNA and DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39708792
Reads aligned (%)
71.7
Duplicates removed (%)
6.8
Number of peaks
793 (qval < 1E-05)

hg19

Number of total reads
39708792
Reads aligned (%)
70.1
Duplicates removed (%)
7.3
Number of peaks
388 (qval < 1E-05)

Base call quality data from DBCLS SRA