SRX3637217
GSM2974578: Asynchronous IgG; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
JM8.N4
cell type
Embryonic stem cells
cell line
JM8.N4
chip antibody
ChromPure Mouse IgG (Jackson 015-000-003

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were processed using standard Illumina paired end library protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
54780649
Reads aligned (%)
97.6
Duplicates removed (%)
29.3
Number of peaks
159 (qval < 1E-05)

mm9

Number of total reads
54780649
Reads aligned (%)
97.4
Duplicates removed (%)
29.6
Number of peaks
129 (qval < 1E-05)

Base call quality data from DBCLS SRA