Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
ALL xenograft
NA
NA

Attributes by original data submitter

Sample

source_name
ALL xenograft cells
tissue
ALL xenograft cells
xenograft id
ALL26
treatment
Dex

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cell suspensions of spleens were prepared and mononuclear cells enriched to >97% human by density gradient centrifugation. The spleen-harvested cells were used for ATAC-seq assay. Buenrostro, J.D., Wu, B., Chang, H.Y. & Greenleaf, W.J. ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide. Curr Protoc Mol Biol 109, 21 29 21-29 (2015).

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
112321504
Reads aligned (%)
40.5
Duplicates removed (%)
27.1
Number of peaks
4041 (qval < 1E-05)

hg19

Number of total reads
112321504
Reads aligned (%)
40.0
Duplicates removed (%)
27.3
Number of peaks
3671 (qval < 1E-05)

Base call quality data from DBCLS SRA