Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
snf[148]_ovaries_H3K9me3
full genotype
yw,snf[148]
age
3-5 days
tissue
ovaries
chip antibody
H3K9me3 (abcam 8898)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were prepared from whole dissected ovaries Libraries were generated using the Rubicon Genomics Library Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm6

Number of total reads
39277236
Reads aligned (%)
95.6
Duplicates removed (%)
69.3
Number of peaks
10927 (qval < 1E-05)

dm3

Number of total reads
39277236
Reads aligned (%)
96.3
Duplicates removed (%)
59.1
Number of peaks
22148 (qval < 1E-05)

Base call quality data from DBCLS SRA