Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Muscle

Cell type

Myoblasts

MeSH Description

Embryonic (precursor) cells of the myogenic lineage that develop from the MESODERM. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes (MYOCYTES, SKELETAL; MYOCYTES, CARDIAC; MYOCYTES, SMOOTH MUSCLE).

Sample

source_name

54-1

cell type

Immortalized skeletal muscle myoblasts

crispr perturbation target

Meis1 knockout

crispr guide

Meis1 knockout 6

time

Day 0

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Nuclei were isolated (please see publication for more details). Please see publication for details on library construction.

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

13255166

Reads aligned (%)

98.6

Duplicates removed (%)

31.1

Number of peaks

3476 (qval < 1E-05)

hg19

Number of total reads

13255166

Reads aligned (%)

98.0

Duplicates removed (%)

31.5

Number of peaks

3437 (qval < 1E-05)