Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FLI1

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
FLI1_HUVEC
cell type
HUVEC
stimulation
none
chip antibody
FLI1 (Santa Cruz, sc-356)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Whole cell lysate was sonicated and subsequently incubated with the antibody to isolate DNA. Libraries were prepared using KAPA Hyper Prep Kit (for illumina) (KAPA)

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
44059197
Reads aligned (%)
77.4
Duplicates removed (%)
16.0
Number of peaks
2368 (qval < 1E-05)

hg38

Number of total reads
44059197
Reads aligned (%)
80.2
Duplicates removed (%)
14.1
Number of peaks
2503 (qval < 1E-05)

Base call quality data from DBCLS SRA