Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

HuH-7

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

source_name

HuH-7 cells

cell type

Liver cancer cells

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit.

Sequencing Platform

instrument_model

Illumina HiSeq 3000

hg38

Number of total reads

31451048

Reads aligned (%)

81.9

Duplicates removed (%)

52.4

Number of peaks

3428 (qval < 1E-05)

hg19

Number of total reads

31451048

Reads aligned (%)

81.5

Duplicates removed (%)

53.1

Number of peaks

3397 (qval < 1E-05)