Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC HUES8
NA
NA

Attributes by original data submitter

Sample

source_name
HUES8 human embryonic stem cells (hESCs)
genotype
SOX17-GFP knockin
parental cell line
HUES8
parental cell type
human embryonic stem cells (hESCs)
differentiation status
ESC
antibody
none (input)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
14225011
Reads aligned (%)
98.5
Duplicates removed (%)
4.4
Number of peaks
688 (qval < 1E-05)

hg19

Number of total reads
14225011
Reads aligned (%)
97.5
Duplicates removed (%)
5.7
Number of peaks
794 (qval < 1E-05)

Base call quality data from DBCLS SRA