SRX3592547
GSM2945739: CD27WT 2; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Natural killer cells
NA
NA

Attributes by original data submitter

Sample

source_name
C57Bl/6 BM CD27+CD11b- NK cells
strain
C57BL/6
genotype
WT
tissue
bone marrow
cell population
CD27+CD11b-
cell type
natural killer (NK) cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Qiagen MiniElute kit IluminaNextera Index kit followed by PCR using using the NEBnext PCR master mix

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
163047685
Reads aligned (%)
85.8
Duplicates removed (%)
37.8
Number of peaks
65439 (qval < 1E-05)

mm9

Number of total reads
163047685
Reads aligned (%)
85.7
Duplicates removed (%)
37.9
Number of peaks
65405 (qval < 1E-05)

Base call quality data from DBCLS SRA