SRX3586646
GSM2941831: Input Rep1 K4me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Gonad
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse gonad
sex/age
embryo E11.5
strain
C57BL/6
tissue
gonad
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Gonad lysates were clarified from MNase digested nuclei and histone-DNA complexes were isolated with specific antibodies Thruplex-FD

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30400550
Reads aligned (%)
94.8
Duplicates removed (%)
16.3
Number of peaks
248 (qval < 1E-05)

mm9

Number of total reads
30400550
Reads aligned (%)
94.5
Duplicates removed (%)
16.2
Number of peaks
282 (qval < 1E-05)

Base call quality data from DBCLS SRA