Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

Hematopoietic Stem Cells

MeSH Description

Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Sample

strain

C57BL/6J

age

3 months

sex

male

tissue

Bone Marrow

cell_type

Hematopoietic stem cells

growth_protocol

3 month old C57BL/6J mice housed in AAALAC-accredited, specific-pathogen-free animal care facilities at Baylor College of Medicine (BCM) with 12hr light-dark cycle and received standard chow ad libitum

treatment

Subcutaneous injection of estradiol (2μg) in corn oil (100μl), daily, for 7 days

replicate

Biological Replicate 2

Sequenced DNA Library

library_name

NK9803_04

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

PCR

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

23982363

Reads aligned (%)

68.8

Duplicates removed (%)

25.9

Number of peaks

40055 (qval < 1E-05)

mm9

Number of total reads

23982363

Reads aligned (%)

68.7

Duplicates removed (%)

26.0

Number of peaks

39992 (qval < 1E-05)