Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
AML246 ChIPseq Dox addition/withdrawal
treatment
12 days Dox
sort parameters
total viable cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were isolated by FACS and ChIP was performed ChIP-seq libraries were prepared using Truseq ChIP seq DNA sample prep kit from Illumina and sequenced on an Illumina NextSeq500.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
64455088
Reads aligned (%)
81.8
Duplicates removed (%)
75.8
Number of peaks
35414 (qval < 1E-05)

mm9

Number of total reads
64455088
Reads aligned (%)
80.5
Duplicates removed (%)
75.5
Number of peaks
35405 (qval < 1E-05)

Base call quality data from DBCLS SRA