Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
HS-SY-II
Primary Tissue
Lung
Tissue Diagnosis
Sarcoma Synovial

Attributes by original data submitter

Sample

source_name
Human Synovial sarcoma cells (HS-SY-II)
hs-sy-ii parental or tagged
HS-SY-II parental line untagged
condition/shrna
SSX. 1274

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
41484374
Reads aligned (%)
98.5
Duplicates removed (%)
0.2
Number of peaks
28926 (qval < 1E-05)

hg19

Number of total reads
41484374
Reads aligned (%)
98.2
Duplicates removed (%)
0.2
Number of peaks
28879 (qval < 1E-05)

Base call quality data from DBCLS SRA