Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Breast
Cell type
3617
NA
NA

Attributes by original data submitter

Sample

source_name
3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, H3K27ac ChIP
cell line
3617-KOGR
cell type
mouse adenocarcinoma
stably expressing
wild-type GFP-GR
treatment
no treatment
concentration
NA
time
NA
chip antibody
H3K27ac (Active Motif, 39133, lot # 31814008)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIP-seq, lysates were clarified from sonicated nuclei, and protein-DNA complexes were isolated with specified antibody. For ATAC-seq, 100 000 isolated nuclei were treated with 2.5 µl Nextera Tn5 Transposase from Nextera kit. For RNA-seq, RNA was extracted using the PureLink RNA mini kit. Libraries were prepared for sequencing using standard Illumina protocols. For ChIP-seq, Illumina TruSeq Chip Sample Prep Kit; for ATAC-seq, Illumina Nextera DNA Library Prep Kit; for RNA-seq, Illumina Stranded Total RNA.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
42680893
Reads aligned (%)
93.4
Duplicates removed (%)
18.9
Number of peaks
38193 (qval < 1E-05)

mm9

Number of total reads
42680893
Reads aligned (%)
93.3
Duplicates removed (%)
19.0
Number of peaks
38162 (qval < 1E-05)

Base call quality data from DBCLS SRA