SRX3517828
GSM2905620: Tcp- and Dex-treated GR ChIP-Seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549 cell line
cell type
lung adenocarcinoma
passages
immortalized
chip antibody
santa cruz (sc-8992)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
70554250
Reads aligned (%)
96.1
Duplicates removed (%)
33.0
Number of peaks
5179 (qval < 1E-05)

hg19

Number of total reads
70554250
Reads aligned (%)
94.9
Duplicates removed (%)
33.6
Number of peaks
3690 (qval < 1E-05)

Base call quality data from DBCLS SRA