Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
age
missing
sex
male
tissue
Embryonic stem cell
cell_line
WT mESC
growth_protocol
Embryonic stem cells were maintained in Dulbecco's modified Eagle's medium (Sigma) containing 10% Knockout SR (Invitrogen), 1% fetal bovine serum (bio west), MEM Non-Essential Amino Acids Solution (Gibco), 0.1% LIF and 2-Mercaptoethanol (Nacalai tesque) described as ES medium hereafter).
sample_type
ChIP

Sequenced DNA Library

library_name
H3K9me3_ChIP_WT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
15767699
Reads aligned (%)
98.5
Duplicates removed (%)
22.6
Number of peaks
343 (qval < 1E-05)

mm9

Number of total reads
15767699
Reads aligned (%)
98.2
Duplicates removed (%)
22.7
Number of peaks
271 (qval < 1E-05)

Base call quality data from DBCLS SRA