SRX3505857
GSM2898868: NA19116 ATAC LCL; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cell Line
biomaterial_provider
Coriell
tissue
Lymphoblastoid Cell Line
cell line
NA19116

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Libraries were prepared using the ATAC-seq protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
59446377
Reads aligned (%)
93.4
Duplicates removed (%)
50.3
Number of peaks
15248 (qval < 1E-05)

hg19

Number of total reads
59446377
Reads aligned (%)
88.7
Duplicates removed (%)
51.5
Number of peaks
15494 (qval < 1E-05)

Base call quality data from DBCLS SRA