SRX3505475
GSM2898831: NA19204 ATAC iPSC; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
Induced pluripotent stem cell
biomaterial_provider
parental cell line from Coriell
tissue
Induced pluripotent stem cell
derived from cell line
NA19204

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Libraries were prepared using the ATAC-seq protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
85631313
Reads aligned (%)
93.0
Duplicates removed (%)
67.3
Number of peaks
29568 (qval < 1E-05)

hg19

Number of total reads
85631313
Reads aligned (%)
92.8
Duplicates removed (%)
67.7
Number of peaks
29357 (qval < 1E-05)

Base call quality data from DBCLS SRA