SRX3504247
GSM2898000: E16.5 Six2- ATAC Seq 3; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Embryonic kidney
NA
NA

Attributes by original data submitter

Sample

source_name
developing kidneys
strain
CFW
developmental stage
E16.5
cell type
Six2-
genotype
genotype: Six2TGC/+

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-Seq (Buenrostro et al, 2013) ATAC-Seq (Buenrostro et al, 2013)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
26525823
Reads aligned (%)
96.2
Duplicates removed (%)
24.1
Number of peaks
14559 (qval < 1E-05)

mm9

Number of total reads
26525823
Reads aligned (%)
96.1
Duplicates removed (%)
24.1
Number of peaks
14516 (qval < 1E-05)

Base call quality data from DBCLS SRA