SRX3504243
GSM2897996: E16.5 Six2+ ATAC Seq 2; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Embryonic kidney
NA
NA

Attributes by original data submitter

Sample

source_name
developing kidneys
strain
CFW
developmental stage
E16.5
cell type
Six2+
genotype
genotype: Six2TGC/+

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-Seq (Buenrostro et al, 2013) ATAC-Seq (Buenrostro et al, 2013)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13891408
Reads aligned (%)
95.1
Duplicates removed (%)
26.5
Number of peaks
10080 (qval < 1E-05)

mm9

Number of total reads
13891408
Reads aligned (%)
95.0
Duplicates removed (%)
26.6
Number of peaks
10031 (qval < 1E-05)

Base call quality data from DBCLS SRA