SRX348589
mouse activated CH12, Nipbl rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

cell_line
CH12
cell_type
murine B cell lymphoma cell line
label
activated CH12

Sequenced DNA Library

library_name
mouse activated CH12 Nipbl
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27647150
Reads aligned (%)
83.9
Duplicates removed (%)
55.8
Number of peaks
4872 (qval < 1E-05)

mm9

Number of total reads
27647150
Reads aligned (%)
83.8
Duplicates removed (%)
55.9
Number of peaks
4899 (qval < 1E-05)

Base call quality data from DBCLS SRA