SRX3485302
GSM2895188: 5.iMT; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Bone
Cell type
Knee articular cartilage
NA
NA

Attributes by original data submitter

Sample

source_name
Human knee articular cartilage
tissue
catilage
cell type
chondrocyte
oa stage
degraded
tissue type
fresh

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Libraries were prepared for sequencing using standered ATAC-seq protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
50023714
Reads aligned (%)
86.4
Duplicates removed (%)
14.0
Number of peaks
13373 (qval < 1E-05)

hg19

Number of total reads
50023714
Reads aligned (%)
85.9
Duplicates removed (%)
14.2
Number of peaks
13217 (qval < 1E-05)

Base call quality data from DBCLS SRA