Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
Muscle satellite cells
NA
NA

Attributes by original data submitter

Sample

source_name
muscle
cell type
Adult muscle satellite cells
protocol
Activated satellite cells cultured for 36 Hrs
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin from activated SCs were isolated and sonicated to 100-300nt for immunoprecipitation with antibodies. Purified RNAs were fragmented and the cDNA were synthesized by reverse transcription. The resulting double-stranded DNA fragments were end-repaired and A-nucleotide overhangs were added. ChIP-seq and RNA-seq libraries were constructed according to the standard illumina pair-end sequencing procedure.

Sequencing Platform

instrument_model
Illumina HiSeq 1000

mm10

Number of total reads
23640607
Reads aligned (%)
80.0
Duplicates removed (%)
8.2
Number of peaks
306 (qval < 1E-05)

mm9

Number of total reads
23640607
Reads aligned (%)
79.9
Duplicates removed (%)
8.5
Number of peaks
249 (qval < 1E-05)

Base call quality data from DBCLS SRA