SRX3480278
ChIP-seq of K562: modification H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

isolate
NA
age
NA
biomaterial_provider
Venters Lab, 746 Robinson Research Building, Nashville, TN 37232
sex
not applicable
tissue
NA
cell_line
K562

Sequenced DNA Library

library_name
1-ChIPseq_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57961610
Reads aligned (%)
92.2
Duplicates removed (%)
24.6
Number of peaks
41737 (qval < 1E-05)

hg19

Number of total reads
57961610
Reads aligned (%)
91.9
Duplicates removed (%)
25.3
Number of peaks
41376 (qval < 1E-05)

Base call quality data from DBCLS SRA