SRX3480277
ChIP-exo of K562: RNA polymerase II

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

isolate
NA
age
NA
biomaterial_provider
Venters Lab, 746 Robinson Research Building, Nashville, TN 37232
sex
not applicable
tissue
NA

Sequenced DNA Library

library_name
2-ChIPexo_Pol2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
70663220
Reads aligned (%)
54.0
Duplicates removed (%)
41.9
Number of peaks
3000 (qval < 1E-05)

hg19

Number of total reads
70663220
Reads aligned (%)
53.6
Duplicates removed (%)
43.1
Number of peaks
2751 (qval < 1E-05)

Base call quality data from DBCLS SRA