SRX3480270
ChIP-seq of K562: RNA polymerase II

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

isolate
NA
age
NA
biomaterial_provider
Venters Lab, 746 Robinson Research Building, Nashville, TN 37232
sex
not applicable
tissue
NA
cell_line
K562

Sequenced DNA Library

library_name
1-ChIPseq_Pol2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29252552
Reads aligned (%)
94.3
Duplicates removed (%)
46.8
Number of peaks
5225 (qval < 1E-05)

hg19

Number of total reads
29252552
Reads aligned (%)
93.8
Duplicates removed (%)
47.6
Number of peaks
5180 (qval < 1E-05)

Base call quality data from DBCLS SRA