Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryonic fibroblast
Cell type
NIH/3T3
Primary Tissue
Embryo
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
embryonic fibroblast
cell line
NIH 3T3 fibroblast cell line
treatment
control
chip antibody
D8L4Y, Cell Signalling Technology

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sheared chromatin was prepared by sonicating nuclei, Pol II-DNA complexes were immunoprecipitated. Libraries were made using the Ovation Ultralow System V2 from NuGEN. Libraries were sequenced on an Illumina HiSEQ 4000

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
39820659
Reads aligned (%)
96.5
Duplicates removed (%)
21.9
Number of peaks
15329 (qval < 1E-05)

mm9

Number of total reads
39820659
Reads aligned (%)
96.2
Duplicates removed (%)
21.9
Number of peaks
15393 (qval < 1E-05)

Base call quality data from DBCLS SRA