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For hg38
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Spleen
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX347283
Reference Epigenome: ChIP-Seq Analysis of H3K9me3 in Human Spleen Tissue
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Others
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.
Attributes by original data submitter
Sample
MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
Shin Lin, Stanford University
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Spleen
TISSUE_DEPOT
N/A
COLLECTION_METHOD
Autopsy
DONOR_ID
STL001
DONOR_AGE
3
DONOR_HEALTH_STATUS
healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)
DONOR_SEX
Male
DONOR_ETHNICITY
Caucasian and African American
sample_term_id
UBERON_0002106
Sequenced DNA Library
library_name
CY362
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
34722860
Reads aligned (%)
96.2
Duplicates removed (%)
6.2
Number of peaks
1872 (qval < 1E-05)
hg19
Number of total reads
34722860
Reads aligned (%)
94.6
Duplicates removed (%)
9.4
Number of peaks
1643 (qval < 1E-05)
Base call quality data from
DBCLS SRA