SRX3469060
ChIP-Seq using AHR antibody in NHEK -DMSO

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Epidermis
Cell type
Foreskin
MeSH Description
The double-layered skin fold that covers the GLANS PENIS, the head of the penis.

Attributes by original data submitter

Sample

isolate
DMSO NHEK
age
neonatal
biomaterial_provider
Lonza
sex
male
tissue
neonatal foreskin
sample_type
ChIP-Seq using AHR antibody
treatment
DMSO

Sequenced DNA Library

library_name
DAHR2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14247188
Reads aligned (%)
51.6
Duplicates removed (%)
10.6
Number of peaks
475 (qval < 1E-05)

hg19

Number of total reads
14247188
Reads aligned (%)
51.2
Duplicates removed (%)
11.8
Number of peaks
537 (qval < 1E-05)

Base call quality data from DBCLS SRA